Use the following short cuts to jump to a set of resources on this page.

General EMBL/EBI Resources
Module I: Plasmodium Problem Space Resources
Module II: Functional Genomics
Module III: Protein Structure & Visualization
Module IV: Ensembl Resources at EBI
Module V: Proteomic Resource at EBI
Previous SCALE-IT Workshop Web Sites


General EMBL/EBI Resources:



Plasmodium Problem Space Resources:

Plasmodium Problem Space: http://bit.ly/problemspace

Liu et al (2010) paper that the Plasmodium Problem Space is built from

Robust Phylogenetic Analysis for the Non-specialist: http://www.phylogeny.fr/
     Some instructions are available here.

Visualizing malaria: Context for exploring the Plasmodium data

  Worldmapper: http://www.worldmapper.org/display.php?selected=2

1. Go to Malaria Cases  http://www.worldmapper.org/display.php?selected=229
2. Malaria Deaths   http://www.worldmapper.org/display.php?selected=23

  Gapminder (prebuilt graph): www.bit.ly/VGrOVZ

1. Run simulation
2. Link Cameroon and run again

   Gapminder (Full Tool): http://www.gapminder.org/

1. Select Gapminder World
– Change Y-axis indicator: Malaria cases/100,000
– Run simulation
2. Link Cameroon
– Run simulation in steps: 1990-1994, 1994-1996, 1996-2005, 1995-1996
– Interpret
3. Explore other countries, other indicators
– Share what you’ve learned

Resources for Functional Genomics:

Plasmodium Problem Space: http://bit.ly/problemspace



Resources for Functional Genomics



Resources for Protein Structure



Ensembl Resources


Proteomics Resources



Previous SCALE-IT Workshop Web Sites: