Working Schedule

Thursday, Jan. 12 Note: The workshop is being held at the National Institute for Mathematical and Biological Synthesis (NIMBioS) located on the fourth floor of 1534 White Avenue within easy walking distance from the hotel.
8:30	Light Breakfast
9	Welcome SCALE-IT Overview Workshop Overview	Harry Richards, SCALE-IT Ethel Stanley, BioQUEST
9:30	Learning to Swim – Dealing with Data Literacy Activities PPT` Exploring Ecoregions WildFinder on the Web WildFinder Spreadsheet Data Literacy Talk PPT	Sam Donovan, University of Pittsburgh Kristin Jenkins, NESCent
10:45	Break
11	Visualizing Data: Gapminder	Kristin Jenkins Sam Donovan
12:30	Lunch & Guest Speaker	Dr. Jerome Baudry of the Biochemistry, Cellular, and Molecular Biology Department and the Center for Molecular Biophysics at ORNL
1:30	Coffee, dessert, and discussion
2	Introduction to the Protein Data Base and Visualizing Proteins: PyMOL & ProteopediaSome PyMOL tutorials that might be handy: Introduction to PyMOL (PDF) PyMOL tutorial (MS Word) Using PyMOL (PDF) PyMOL Tutorial (PDF) PyMOL Laboratory #1 PyMOL Laboratory #2 PyMOL Laboratory #3 My PPT presentation	Stephen Everse, University of Vermont
3:30	Break
3:45	Establish Working Groups/Group work time on projects
4:45	Posting about group work
Friday, Jan. 13
8:30	Breakfast
9:00	Modeling SNPs to Understand Bacterial EvolutionBacterial Evolution EMBL EBI Project I Worksheet ng.997-S2.xlsx modified ng.977-S2.xlsx isolates file Project II Worksheet burkisolates Modified burkisolates ClustalW2 Project III Worksheet burksim.xls Numbers Count! Project	Claudia Neuhauser, University of Minnesota Rochester Ethel Stanley
10:15	Break
10:30	Modeling SNPs to Understand Bacterial Evolution Part 2	Claudia Neuhauser Ethel Stanley
12:30	Lunch & Guest Speaker	Dr. Bob Hettich of the Genome Science and Technology Program and the Organic and Biological Mass Spectrometry Group at ORNL
1:30	Coffee, dessert, and discussion
2:00	Paper: Incorporating Quantitative Reasoning in Common Core Courses Dengue-Fever-Argentina-Aparicio_NIMBioS.pptx Nightingale CDC Dengue Fever Dengue-Fever-BMC-2009-w- tree.pdf WHO Dengue Net DengueNetFlyer2006.pdf World Mapper Dengue Fever World Mapper Dengue Data Set World Mapper Dengue Fever Map Network Science (wiki) Net Logo SIR Graph Theory Model SIR Message Epidemic Spread Simulation with Cellular Automata Epidemiology: the SIR model Simulation/SIR Model/HIV Cholera First Victim, Haiti	John R. Jungck, Beloit College
3:30	Break
3:45	Group Project Work Time
4:45	Posting about group work
6:00	Group Dinner at Sheraton Four Points Hotel
Saturday, Jan. 14
8:30	Breakfast
9	Wrapping up and posting group projects	Stephen Everse Kristin Jenkins
9:30	Project Presentations
11:30	Participant Survey and Posting
11:45	Next Steps	Ethel Stanley

Thursday, Jan. 12

Friday, Jan. 13

Group Project Work Time

Group Dinner at Sheraton Four Points Hotel

Saturday, Jan. 14

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