Category Archives: PyMOL

Using PyMOL to investigate structural data

Comparing two structures of Src Tyrosine Kinase: 2src and 3src

Posted on January 13, 2012 by rzhao1978

The goal is to visualize and compare the two structures of Src Tyrosine Kinase, 2src and 3src downloaded from PDB using PyMOL. We use the built-in function align to get some quantitative measures for the difference of two structures. The … Continue reading →

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Alicia and Laura’s RNA polymerase structure

Posted on January 12, 2012 by aschultheis

Our figure shows eukaryotic (yeast) RNA polymerase. Red and blue indicate negative and positive charges, respectively. A large positively charged cleft where DNA binds is visible at the top of the image. The image below shows a close up of … Continue reading →

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