Category Archives: Phase I

Phase I Visualization Project -Paternity test

Objectives: Visualize data obtained from analysis of DNA sequences used for a paternity test. Identify and plot points, analyze and interpret  graph. Biophysics of molecular interaction in the DNA ultra structure Methodology: Look in some data base for highly repetitive … Continue reading

Posted in Phase I | Comments Off on Phase I Visualization Project -Paternity test

TB Rate

What social/political/economic factors influence rates of TB infection in different nations? Are there other, biological, factors? Data: WHO    

Posted in Phase I | Comments Off on TB Rate

Calculus for biologists

What to address. Teaching calculus to biologist. Using simple functions to describe data. Using HIV data from WHO we consider Exp functions Using other data we plan to consider Power functions Trig functions Derivatives  with two groups.

Posted in Phase I | 1 Comment

Patty's Data Visualization Mini Project

Teachers are are regularly bombarded with assessment data at the classroom, school, district, state and national level.  I thought visualizing some of this data using the tools we have been introduced to would be one way I might use what … Continue reading

Posted in Phase I | Tagged | Comments Off on Patty's Data Visualization Mini Project

HIV trend

Posted in Phase I | Comments Off on HIV trend

Arlin and Vilma Phase 1

We want to use maps and data to analyze the ecology of the dengue disease.

Posted in Phase I | Comments Off on Arlin and Vilma Phase 1

Gaolin's test post

A snapshot from genedoc

Posted in Phase I | Tagged | Comments Off on Gaolin's test post

goals

So far, the google docs file format has me scratching my head.  Gapminder was a treat. Incoporating it into courses in a way that is relevant to course content will be a challenge. Capturing pdb images, manipulating and highlihgting functional … Continue reading

Posted in Phase I | Comments Off on goals

Molecular Data

Our group is Debra, Robin, and Becky.  Our question focuses on visualization of gene expression data. This data comes from NCBI for one gene (Cola5A2) and contains 6-7 samples from Alzheimer’s patients with varying severity (incipient, moderate, and severity) and … Continue reading

Posted in Phase I | Tagged | Comments Off on Molecular Data

Dorjsuren/Xiaofei

this is to visualize gene expression in response to treatment. Condition 1 is the control and condition 2 is the expression level after treated with a drug.

Posted in Phase I | Tagged | Comments Off on Dorjsuren/Xiaofei