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Workshop Announcement
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October 9 - 12, 2003


Thursday, October 9th

4:30 6:00 PM

Welcome Reception Dinner                 Room G-10, Biotech Bldg

6:00 PM

Welcome from Margaret Corbit, Sondra Lazarowitz, and Linda Callahan, Cornell Theory Center, Cornell University

6:15 – 6:45 PM

Introduction to Workshop
John R. Jungck, PI, BEDROCK

6:45 – 7:15 PM
One Cell, Three Genomes: Intracellular Gene and Protein Trafficking
John R. Jungck

7:15 – 7:45 PM

Break – We will move from G-10, Biotech Bldg to 655 Rhodes Hall

7:45 – 8:00 PM
Introduction to Biology Workbench
Anton Weisstein
8:00 – 9:00 PM

One Cell, Three Genomes Lab Work

Friday, October 10th

Open @ 8:00 AM

Continental Breakfast Room                 655 Rhodes Hall

9:00 – 9:45 AM

Overview of BioQUEST Curriculum Consortium and BEDROCK
Sam Donovan, Co-PI, BEDROCK

9:45 – 10:15 AM

Molecular Visualization
Rama Viswanathan and Theresa Johnson

Molecular visualization and modeling tools in bioinformatics: an introduction to visualization software and a comparison of the various features.

10:15 – 10:30 AM
10:30 – 11:30 AM

Molecular Visualization Lab Work

Hands-on example: Rational drug design using CAChe® -- a comprehensive suite of visualization, modeling, and simulation tools.

11:30 – 1:15 PM

Lunch and Group Work

1:15 2:30 PM

Pseudomonas Syringae Functional Genomics:
A case study for integrating computational and experimental biology
David Schneider and Alan Collmer

PDF version of this talk
Supplemental PowerPoint file

For more information, see:

2:30 2:45 PM

2:45 – 3:15 PM

Conservation and Invasive Species:
A case study on salt cedar in the American West
Anton Weisstein

3:15 – 4:15 PM
Conservation and Invasive Species Lab Work

4:15 5:30 PM

Group Work and Poster Preparation

5:30 6:30 PM

Social Hour and Discussion of Computational Biology
Qi Sun and Jaroslaw Pillardy
(See for more information.)
Light snacks provided

6:30 PM
Supper (on your own)

Saturday, October 11th

Open at 8:00 AM

Continental Breakfast                 655 Rhodes Hall

9:00 – 10:00 AM


10:00 – 10:15 AM
10:15 – 10:45 AM

Looking into Glycosidases: A Bioinformatics Resource for Biology Students
Sam Donovan

We will break out in small groups to visit the CAVE facility.
(See for more information.)

10:45 – 11:45 AM

Looking into Glycosidases Lab Work

11:45 – 1:15 PM
Lunch and Group Work and Discussions
1:15 – 2:45 PM
Pseudomonas syringae functional genomics:
Using Gene Ontology for genome annotation and knowledge unification
Candace W. Collmer, and Mark D'Ascenzo
2:45 – 3:00 PM
3:00 – 5:30 PM
Group Work and PowerPoint Preparation
7:00 PM
Reservations have been made and all are invited to dinner at Pangea Restaurant Each diner is responsible for their own tab.

Sunday, October 12th

Open @ 8:00 AM
Continental Breakfast                 655 Rhodes Hall
Power Point Presentations (sharing projects and courses):
9:00 – 9:20 AM
Group A
9:20 – 9:40 AM
Group B
9:40 – 10:00 AM
Group C
10:00 – 10:20 AM
Group D
10:20 – 10:30 AM
10:30 – Noon
How to stay involved, feedback, sharing table (we will duplicate materials for participants), cut and distribute CDs, web sites & databases, collaboratories, other resources.

For more information please contact Tia Johnson or Sue Risseeuw (608/363-2012).

Sponsored by a grant from the National Science Foundation (DUE/CCLI-ND)