Sequence alignment

Consensus key (see documentation for details)

* - single, fully conserved residue

- no consensus

CLUSTAL W (1.8) multiple sequence alignment

MMU08337 ------------------------------------------------------------

HSGDF5 CCATGGCCTCGAAAGGGCAGCGGTGATTTTTTTCACATAAATATATCGCACTTAAATGAG

AF123389 ------------------------------------------------------------

MMU08337 ------------------------------------------------------------

HSGDF5 TTTAGACAGCATGACATCAGAGAGTAATTAAATTGGTTTGGGTTGGAATTCCGTTTCCAA

AF123389 ------------------------------------------------------------

MMU08337 ------------------------------------------------------------

HSGDF5 TTCCTGAGTTCAGGTTTGTAAAAGATTTTTCTGAGCACCTGCAGGCCTGTGAGTGTGTGT

AF123389 ------------------------------------------------------------

MMU08337 ------------------------------------------------------------

HSGDF5 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGTATTTTCACTGGAAAGGATTCAAAACTA

AF123389 ------------------------------------------------------------

MMU08337 ------------------------------------------------------------

HSGDF5 GGGGGAAAAAAAAACTGGAGCACACAGGCAGCATTACGCCATTCTTCCTTCTTGGAAAAA

AF123389 ------------------------------------------------------------

MMU08337 ------------------------TTCAAGCCCTCAGTCAGTTGTGCGGGAGAAAGGGGG

HSGDF5 TCCCTCAGCCTTATACAAGCCTCCTTCAAGCCCTCAGTCAGTTGTGCAGGAGAAAGGGGG

AF123389 ------------------------------------------------------------

MMU08337 CGGTCGGCTTTCTCCTTTCAAGAACGAGTTATTTTCAGCTGCTGACTGGAGACGGTGCAC

HSGDF5 CGGTTGGCTTTCTCCTTTCAAGAACGAGTTATTTTCAGCTGCTGACTGGAGACGGTGCAC

AF123389 ------------------------------------------------------------

MMU08337 GTCTGGACACGGGAGCACTTCCACTATGGGACTGGATACAGACACACGCCCGGCGGACTT

HSGDF5 GTCTGGATACGAGAGCATTTCCACTATGGGACTGGATACAAACACACACCCGGCAGACTT

AF123389 ------------------------------------------------------------

MMU08337 CAAGACACTCAGACTGAGGAGAAAGCCCTGCCTGCTGCTGCTGCTGCTGCTGCTGCCACC

HSGDF5 CAAGAGTCTCAGACTGAGGAGAAAGCCTTTCCTTCTGCTGCTACTGCTGCTGC-----C-

AF123389 ------------------------------------------------------------

MMU08337 GCTGCCTCTGAAGACCCACTCCTTTCATGGTTTTTCCTGCCAAGCCAGAGGCACCTTCGC

HSGDF5 GCTGCTTTTGAAAGTCCACTCCTTTCATGGTTTTTCCTGCCAAACCAGAGGCACCTTTGC

AF123389 ------------------------------------------------------------

MMU08337 TGCTACGGCCTTTCTCTGTGGTGTCATTCAGCGGCTGGCCAGAGGATGAGACTCCCCAAA

HSGDF5 TGCTGCCGCTGTTCTCTTTGGTGTCATTCAGCGGCTGGCCAGAGGATGAGACTCCCCAAA

AF123389 ---------------------------------------------ATGAAAATCCTGCAT

**** * *** *

MMU08337 CTCCTCACTCTTTTGCTGTGGCACCTGGCTTGGCTGGACCTGGAACTCATCTGCACTGTG

HSGDF5 CTCCTCACTTTCTTGCTTTGGTACCTGGCTTGGCTGGACCTGGAATTCATCTGCACTGTG

AF123389 TTTCTCACTTTACTGCTTTGGCATTTGACTTGGCTGTCTCTGGATCGTGTTCCTGGAGCA

* ****** * **** *** * ** ******** ***** * *

MMU08337 CTGGGTGCCCCTGACTTAGGACAGAGAACCCCAGGGGCCAAGCCAGGGTTGACCAAAGCG

HSGDF5 TTGGGTGCCCCTGACTTGGGCCAGAGACCCCAGGGGACCAGGCCAGGATTGGCCAAAGCA

AF123389 CTGAGTAACTCCGAAGCAGGCCAGAGTAATCCAGGGTCTAAAACAGATCTGTTAAAAGCA

** ** * * ** ** ***** * *** * * *** ** *****

MMU08337 GAGGCCAAGGAGAGGCCACCCCTGGCCAGG---AATGTCTTTAGGCCAGGGGGTCATATC

HSGDF5 GAGGCCAAGGAGAGGCCCCCCCTGGCCCGG---AACGTCTTCAGGCCAGGGGGTCACAGC

AF123389 GAAGGAAAAGAGAGGACTGCCTCAGCACGGTCGGGCGCGCCGCGGGCTGCGAACCATGGA

** * ** ****** * ** ** ** * ** * * * **

MMU08337 TATGGTGTGGGGGCCACCAATGCCA------GGGCCAAGGGAAGCTCTGGGCAGACA---

HSGDF5 TATGGTGGGGGGGCCACCAATGCCAATGCCAGGGCAAAGGGAGGCACCGGGCAGACAGGA

AF123389 TTTAGCACCGGGACCTCGAAGGCGA------GGGCTAAAAGCAACGCTGCTCAGGCTGGA

* * * *** ** * ** ** * **** ** * * * * *** *

MMU08337 ---------CAGGCCAAGAAGGATGAACCCAGAAAGATGCCCCCCAGATCCGGTGGCTCT

HSGDF5 GGCCTGACACAGCCCAAGAAGGATGAACCCAAAAAGCTGCCCCCCAGACCGGGCGGCCCT

AF123389 GCTCTG---CTGGCCAAGAACGATGAATCACAGAGGGTTCTTTCAAGAACAGCAGTCACA

* * ******* ****** * * * * * * *** * * * * *

MMU08337 GAAACCAAGCCAGGACCCTCTTCCCAGACTAGACAGGCTGCAGCCCGGACTGTAACCCCA

HSGDF5 GAACCCAAGCCAGGACACCCTCCCCAAACAAGGCAGGCTACAGCCCGGACTGTGACCCCA

AF123389 GAGGCAAAGGTAGGACA---TCTCCCGAGCAGACCTTCTGCAGTAAGGACGGTGACTCCA

** * *** ***** * ** * ** * ** *** **** ** ** ***

MMU08337 AAAGGACAGCTTCCTGGGGGCAAAGCATCTTCAAAAGCA------------GGATCTGCC

HSGDF5 AAAGGACAGCTTCCCGGAGGCAAGGCACCCCCAAAAGCA------------GGATCTGTC

AF123389 AAGGTCCCAAATCTTGGCAGCAAGGCGGCTCTGAAGAAAACTGGCACGGGCGGCACTGAT

** * * ** ** **** ** * ** * ** ***

MMU08337 CCCAGCTCCTTCCTGCTGAAGAAGACCAGGGAGCCTGGGACCCCTCGAGAGCCCAAGGAG

HSGDF5 CCCAGCTCCTTCCTGCTGAAGAAGGCCAGGGAGCCCGGGCCCCCACGAGAGCCCAAGGAG

AF123389 GCCAGCTCCTTCAAAACGAAGAAGACTAAAGAGCCTGTGACCCAAAGGGAAGCTAAGGAA

*********** ******* * * ***** * * *** * ** * *****

MMU08337 CCGTTCCGCCCGCCCCCCATCACACCCCACGAATACATGCTCTCCCTGTACAGGACGCTG

HSGDF5 CCGTTTCGCCCACCCCCCATCACACCCCACGAGTACATGCTCTCGCTGTACAGGACGCTG

AF123389 ACCTTCAGCAGGCCCCCTATAACGCCACATGAATACATGCTCTCTTTGTACAGGACTCTC

* ** ** ***** ** ** ** ** ** *********** ********** **

MMU08337 TCCGATGCTGACAGAAAGGGAGGTAACAGCAGCGTGAAGTTGGAGGCTGGCCTGGCCAAC

HSGDF5 TCCGATGCTGACAGAAAGGGAGGCAACAGCAGCGTGAAGTTGGAGGCTGGCCTGGCCAAC

AF123389 TCAGATGCAGAAAGAAAAGGTGTTAATGGAAGTGTAAAACTGGAGGCTGGACTCGCCAAT

** ***** ** ***** ** * ** * ** ** ** ********** ** *****

MMU08337 ACCATCACCAGCTTTATTGACAAAGGGCAAGATGACCGAGGCCCTGCGGTCAGGAAGCAG

HSGDF5 ACCATCACCAGCTTTATTGACAAAGGGCAAGATGACCGAGGTCCCGTGGTCAGGAAGCAG

AF123389 ACAATAACCAGCTTTATAGACAAGGGACAAGATGAGCGAGCGCCAACCATAAGAAAACAA

** ** *********** ***** ** ******** **** ** * ** ** **

MMU08337 AGGTACGTGTTTGACATCAGTGCCTTGGAGAAGGATGGGCTGTTGGGGGCTGAACTGCGG

HSGDF5 AGGTACGTGTTTGACATTAGTGCCCTGGAGAAGGATGGGCTGCTGGGGGCCGAGCTGCGG

AF123389 AAATATATTTTTGACATCAGTGCATTAGAAAAAGATGGCCTGCTGGTAGCAGAGCTTCGA

* ** * ******** ***** * ** ** ***** *** *** ** ** ** **

MMU08337 ATCTTACGGAAGAAGCCCTTGGACGTGGCCAAGCCAGCGGTCCCCAGTAGCGGGCGGGTT

HSGDF5 ATCTTGCGGAAGAAGCCCTCGGACACGGCCAAGCCAGCGGCCCCCGGAGGCGGGCGGGCT

AF123389 ATACTGAGGAAAAATCCTTCTGATACGTGGAAGTCT-CATTCTTC--T---GGAAAAACT

** * **** ** ** * ** * *** * * * * ** *

MMU08337 GCCCAACTGAAGCTGTCCAGCTGCCCCAGCGGCCGGCAGCCGGCAGCCTTGCTGGATGTG

HSGDF5 GCCCAGCTGAAGCTGTCCAGCTGCCCCAGCGGCCGGCAGCCGGCCTCCTTGCTGGATGTG

AF123389 TCCCAGGTGAAATTATTTAGTTGCTCTACCAACAGACAAGCAGCAACACTGCTGGACTCT

**** **** * * ** *** * * * * * ** * ** * *******

MMU08337 CGCTCCGTGCCAGGCCTGGATGGATCTGGCTGGGAGGTGTTCGACATCTGGAAGCTCTTC

HSGDF5 CGCTCCGTGCCAGGCCTGGACGGATCTGGCTGGGAGGTGTTCGACATCTGGAAGCTCTTC

AF123389 CGTACCGTCAGTATCACGGACACACCAAAATGGGAAGTGTTTGACATCTGGAAGCTTTTT

** **** * *** * * ***** ***** ************** **

MMU08337 CGAAATTTTAAGAACTCAGCGCAGCTGTGCCTGGAGCTGGAGGCCTGGGAACGGGGCCGG

HSGDF5 CGAAACTTTAAGAACTCGGCCCAGCTGTGCCTGGAGCTGGAGGCCTGGGAACGGGGCAGG

AF123389 AGGAACTTTAAAAACTTGGTTAACTTGTGTTTCGAACTGGAAACTTTTGACAGGGGGAGA

* ** ***** **** * * **** * ** ***** * * ** **** *

MMU08337 GCCGTGGACCTCCGTGGCCTGGGCTTTGAACGCACTGCCCGACAGGTCCACGAGAAAGCC

HSGDF5 GCCGTGGACCTCCGTGGCCTGGGCTTCGACCGCGCCGCCCGGCAGGTCCACGAGAAGGCC

AF123389 GCGGTTGATCTCAGGACTGTGGGATTTAACAGAACGGGAAGACAGGTCAACGAAAAGGCT

** ** ** *** * **** ** * * * * * ****** **** ** **

MMU08337 TTGTTCCTAGTGTTTGGTCGTACCAAGAAACGGGACCTGTTCTTTAATGAGATTAAGGCC

HSGDF5 CTGTTCCTGGTGTTTGGCCGCACCAAGAAACGGGACCTGTTCTTTAATGAGATTAAGGCC

AF123389 CTCTTCTTGGTATTTGGGAGGACAAAGAAAAGGGACTTATTTTTCAATGAAATCAAAGCT

* *** * ** ***** * ** ****** ***** * ** ** ***** ** ** **

MMU08337 CGCTCTGGCCAGGATGACAAGACTGTGTATGAATATTTGTTCAGCCAGCGGCGGAAACGC

HSGDF5 CGCTCTGGCCAGGACGATAAGACCGTGTATGAGTACCTGTTCAGCCAGCGGCGAAAACGG

AF123389 AGATCCGGCCAGGACGACAAAACCGTGTATGAGTACTTATTCAATCAGAGGCGGAAGAGA

* ** ******** ** ** ** ******** ** * **** *** **** ** *

MMU08337 CGGGCCCCATTGGCCAATCGCCAGGGCAAGCGACCCAGCAAGAACCTCAAGGCTCGCTGC

HSGDF5 CGGGCCCCACTGGCCACTCGCCAGGGCAAGCGACCCAGCAAGAACCTTAAGGCTCGCTGC

AF123389 AGAGCTCCTCTGGCAACACGCCAAGGGAAGAGGCCCAGTAAGAACCTGAAGCCAAGGTGT

* ** ** **** * ***** ** *** * ***** ******** *** * * **

MMU08337 AGTCGCAAGGCCTTGCATGTCAACTTCAAGGACATGGGCTGGGACGACTGGATCATCGCA

HSGDF5 AGTCGGAAGGCACTGCATGTCAACTTCAAGGACATGGGCTGGGACGACTGGATCATCGCA

AF123389 AGCAGAAAAGCCCTCCATGTGAATTTTAAGGACATGGGCTGGGATGACTGGATAATAGCA

** * ** ** * ***** ** ** ***************** ******** ** ***

MMU08337 CCTCTTGAGTATGAGGCCTTCCACTGCGAAGGACTGTGTGAGTTCCCCTTGCGCTCCCAC

HSGDF5 CCCCTTGAGTACGAGGCTTTCCACTGCGAGGGGCTGTGCGAGTTCCCATTGCGCTCCCAC

AF123389 CCCCTGGAATACGAAGCGTATCACTGCGAAGGTCTGTGTGAGTTCCCCCTCCGATCCCAC

** ** ** ** ** ** * ******** ** ***** ******** * ** ******

MMU08337 T TGGAGCCCACAAACCACGCAGTCATTCAGACCCTAATGAACTCTATGGACCCTGAATCC

HSGDF5 CTGGAGCCCACGAATCATGCAGTCATCCAGACCCTGATGAACTCCATGGACCCCGAGTCC

AF123389 CTGGAGCCCACCAATCACGCCGTTATCCAAACTTTAATGAACTCAATGGACCCCGAATCA

********** ** ** ** ** ** ** ** * ******** ******** ** **

MMU08337 ACACCACCCACTTGTTGTGTGCCTACACGGCTGAGTCCTATTAGCATCCTCTTCATCGAC

HSGDF5 ACACCACCCACCTGCTGTGTGCCCACGCGGCTGAGTCCCATCAGCATCCTCTTCATTGAC

AF123389 ACGCCTCCAACTTGCTGTGTCCCAACCAGGCTGAGTCCTATCAGCATTCTCTTCATTGAC

** ** ** ** ** ***** ** ** ********** ** ***** ******** ***

MMU08337 TCTGCCAACAACGTGGTGTATAAACAGTACGAGGACATGGTCGTGGAATCTTGTGGCTGC

HSGDF5 TCTGCCAACAACGTGGTGTATAAGCAGTATGAGGACATGGTCGTGGAGTCGTGTGGCTGC

AF123389 TCTGCAAACAATGTGGTCTACAAGCAGTACGAGGACATGGTGGTGGAGTCGTGTGGCTGC

***** ***** ***** ** ** ***** *********** ***** ** *********

MMU08337 AGGTAGCAGCACCGGCCCACCTGTCTTCCAGGGTGGCACATCCAGAGACTACCCCCTCTA

HSGDF5 AGGTAGCAGCACTGGCCC-TCTGTCTTCCTGGGTGGCACATCCCAAGAGC-CCCTTCCTG

AF123389 AGGTAGCAGAACAGTTGCTCATGT------GAATGGTGTT--------------------

********* ** * * *** * ***

MMU08337 CAGGTTCCTGGAGTAACAGAGAGCCTGTGAAGCTGCTGCCCGAAGTTTCCTGGCAGCCTG

HSGDF5 CA--CTCCTGGAATCACAGAGGGGTCAGGAAGCTG-TGGCAGGAGCATCTACACAGCTTG

AF123389 ------------------------------------------------------------

MMU08337 CAGGAAAGAGTTCTC-----AGCAGGCTTACTCTCTGGATGTGATCTGGACTAAAG----

HSGDF5 GGTGAAAGGGGATTCCAATAAGCTTGCTCGCTCTCTGAGTGTGACTTGGGCTAAAGGCCC

AF123389 ------------------------------------------------------------

MMU08337 ------------AGATCACCTT--CTGAAGATTCCTGCCCAAG----GAACAGACTCTGA

HSGDF5 CCTTTTATCCACAAGTTCCCCTGGCTGAGGATTGCTGCCCGTCTGCTGATGTGACCAGTG

AF123389 ------------------------------------------------------------

MMU08337 GTGGGCCTGGGGCTCAGGAAAGGTGTTCTTAATGAGATTCAGTTC------ACCATCTCT

HSGDF5 GCAGGCACAGGTCCAGGGAGACAGACTCTGAATGGGACTGAGTCCCAGGAAACAGTGCTT

AF123389 ------------------------------------------------------------

MMU08337 CCTGCCGGGGCCGGAGACCTTCATTTCTCTCCAGACTCTCCAGAGAAGTTGTAGCTATAT

HSGDF5 TCCGATGAGACTC-AGCCCACCATTTCTCCTCACCTGGGCCTTCTCAGCCTCTGGACTCT

AF123389 ------------------------------------------------------------

MMU08337 CCTAAGCTCTTTAAGGGAGAGCTGT---------CTCCTCCTTGAATCACCTTTGTGCCT

HSGDF5 CCTAAGCACCTCTCAGGAGAGCCACAGGTGCCACTGCCTCCTCAAATCACATTTGTGCCT

AF123389 ------------------------------------------------------------

MMU08337 GGTGACTTTCTGCCAC-GAGATGTTCATTACAGGGGCTGGGCAAAGAAGGG---GAAAGG

HSGDF5 GGTGACTTCCTGTCCCTGGGACAGTTGAGAAGCTGACTGGGCAAGAGTGGGAGAGAAGAG

AF123389 ------------------------------------------------------------

MMU08337 GCTTGGGCAGGGGTGAAGA-GAAGAGTATGAGCCTAATTAGACTGTTAGATTAAAATGTA

HSGDF5 GAGAGGGCTTGGATAGAGTTGAGGAGTGTGAGGCTG-TTAGACTGTTAGATTTAAATGTA

AF123389 ------------------------------------------------------------

MMU08337 CATCGATGACATAAAAGCTGAATCTTCATGGCT

HSGDF5 TATTGATGAGATAAAAAGCAAAACT--GTGCCT

AF123389 ---------------------------------

Clustal W options and diagnostic messages

Alignment type: Nucleic Alignment order: aligned

Pairwise alignment parameters

Method: accurate

Matrix: IUB

Gap open pentalty: 15.00 Gap extension pentalty: 6.66

Multiple alignment parameters

Matrix: IUB Negative matrix?: no

Gap open pentalty: 15.00 Gap extension pentalty: 6.66

% identity for delay: 30 DNA transitions weighting: 0.5

CLUSTAL W (1.8) Multiple Sequence Alignments