Biology Student Workbench
Workshop: Integrating Bioinformatics into Biology
Science Education, Teacher Education, and
Educational Technology Courses
Binder Contents
1.
Workshop Information
Welcome
Letter
Workshop
Agenda, ACCESS Center and Beckman Center
Participant
Lists, ACCESS Center and Beckman Center
2.
Biology Workbench
Subramaniam,
Shankar, 1998. The Biology
Workbench—A Seamless Database and
Analysis Environment for the Biologist.
PROTEINS: Structure, Function, and
Genetics, Volume 32, p. 1-2.
Cotter,
Dawn, 1999, About the Biology WorkBench.
BioQUEST Notes, Volume 9, number 3, May,
p. 8-10.
Boyce,
Ed, 2000. BioQUEST and EOT: Using Biology
WorkBench to Bridge Research and
Educational Agendas. Online: News about
the NPACI and SDSC Community, Volume 4,
issue 1, January 12, http://www.npaci.edu/online/v4.1/bioquest.html
Jakobsson,
Eric, and Donovan, Sam. Introduction to
the Biology Student Workbench.
3.
Tutorial I
Sabo,
John M., Lynch, Jamie L., and Raineri,
Deanna M., Sickle Cell Anemia:
Understanding the Molecular Biology.2001.
Biology Student Workbench. http://bioweb.ncsa.uiuc.edu/educwb/tutorials_current/Sickle_Cell_Anemia/SC2000/
4.
Tutorial II
Donovan
S., and Greene, K, 2000. Activities from
“Using the Internet to do Biological
Inquiry: Adventures in Bioinformatics,
from a Workshop at Beloit College, Nov.
11, 2000.
http://bioquest.org/bioinformatics/edgridbeloit/activities.html
Markham,
Richard B., et al, 1998. Patterns of
HIV-1 Evolution in Individuals with
Differing Rates of CD4 T Cell Decline, in
Proceedings of the National Academy of
Science, Volume 95, p. 12568-12573.
5.
Bioinformatics--General
National
Center for Biotechnology Information,
NCBI News, Fall/Winter 2000
Hagen,
Joel B., 2000. The Origins of
Bioinformatics. Nature Reviews Genetics,
Volume 1, December, p. 231-236.
Boguski,
Mark S., 1998. Bioinformatics—A New
Era. Trends Guide to Bioinformatics,
Elsevier Science, p. 1-3.
Are
You Ready For the Revolution, editorial,
in Nature, Volume 409, 15 February 2001,
p 758-760.
Watkins,
Karen (2001). Bioinformatics: Making
sense of information mined from the human
genome is a massive undertaking for the
fledgling industry. Chemical and
Engineering News. Feb 19. p. 29-45. http://pubs.acs.org/cen
Kanehisa,
Minoru, 1998. Databases of Biological
Information. Trends Guide to
Bioinformatics, Elsevier Science, p.
24-26.
Altschul,
Stephen F., 1998. Fundamentals of
Database Searching. Trends Guide to
Bioinformatics, Elsevier Science, p. 7-9.
Apostolico,
Alberto, & Giancarlo, Raffaele, 1998.
Sequence Alignment in Molecular Biology.
Journal of Computational Biology, Volume
5, number 2, p. 173-196.
6.
Bioinformatics—Education
Gross,
Louis, 2000. Education for a Biocomplex
Future, in Science, Volume 288, Number
5467 p. 807.
Altman,
Russ B., 1998. A Curriculum for
Bioinformatics: The Time is Ripe.
Bioinformatics, Volume 14, number 7, p.
549-550.
Brass,
Andy, 2000. Bioinformatics
Education—A UK Perspective.
Bioinformatics, Volume 16, number 2, p.
77-78.
Bruce,
Bertram C, & Levin, James A., 1997.
Educational Technology: Media for
Inquiry, Communication, Construction, and
Expression, in Journal of Educational
Computing Researcher, Volume 17, Number
1, p. 79-102, http://www.lis.uiuc.edu/~chip/pubs/taxonomy/index.html
Bruce,
Bertram C., 2001. The Inquiry Page: A
Collaboratory for Curricular Innovation,
in Learning Technology, Volume 3, Issue
1. http://lttf.ieee.org/learn_tech/
Weiner,
Steven W., et al, 2000. RasMol and Mage
in the Undergraduate Biochemistry
Curriculum, in The Journal of Chemical
Education. Volume 77, Number 3, p.
401-406.
7.
Additional Materials
DOE,
Office of Biological and Environmental
Research, 2000. Human Genome Landmarks,
Selected Traits and Disorders, Mapped to
Chromosomes, poster. www.ornl.gov/hgmis/posters
DOE,
Office of Biological and Environmental
Research, 2001. Microbial Genome Program
pamphlet.
http://www.science.doe.gov/ober/microbial.html
DOE,
Office of Biological and Environmental
Research, 2001. Quick Index to the Human
Genome Project Information Website, http://www.ornl.gov/hgmis
DOE,
Office of Biological and Environmental
Research, 2000. Microbial Genome Program
(DOE/SC-0016).
BioQUEST
Notes, 2001, Volume 11, Number 1.
BioQUEST
Curriculum Consortium Library Volume VI.
Academic Press, module information.
Unseen
Life on Earth, an Introduction to
Microbiology, program brochure.
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