BEDROCK Project Home Page
NSF Home Page
American Society for Microbiology

Workshop Announcement

ASM Workshop Schedule
March 2 - 5, 2006

Thursday, March 2nd

6:00 PM

Welcome Reception Dinner

6:30 – 6:45 PM

Welcome and Introduction to ASM
Amy Chang

6:45 – 7:00 PM

Brief introduction to workshop
John R. Jungck, PI, BEDROCK

7:00 7:30 PM

Introduction to HIV Problem Space
Marion Fass, Beloit College

7:30 7:50 PM

Introduction to Biology Workbench
Stephen J. Everse, University of Vermont
and Assistant Director, BEDROCK

7:50 9:00 PM

HIV Problem Space Lab Work

Friday, March 3rd

9:00 9:30 AM

Overview of BioQUEST Curriculum Consortium
Ethel Stanley, Director of BioQUEST Curriculum Consortium

9:30 10:30 AM

Molecular Phylogenetics
John Jungck

10:30 10:45 AM


10:45 11:00 AM

Intro to West Nile Virus Problem Space
Ethel Stanley

11:00 12:30 PM

West Nile Virus Problem Space Lab Work

12:30 1:30 PM


1:30 2:30 PM

Evolutionary Bioinformatics
John R. Jungck

2:30 3:00 PM

Hiram Genomics Initiative
B. Goodner, Hiram College

3:00 3:15 PM


3:15 4:15 PM

Lab Work - Hiram Genomics Initiative
B. Goodner

4:15 6:00 PM

Group Work and Poster Preparation

Saturday, March 4th

8:00 – 9:00 AM

Open early for Group Work and Poster Preparation

9:00 – 10:00 AM
Poster presentations on one of these problem
spaces:  HIV, West Nile Virus, or Hiram Initiative
10:00 – 10:15 AM
10:15 10:45 AM
Introduction to Transferrin and Bacterial Iron Problem Space: Dealing with Three Dimensional Structures, Stephen J. Everse
10:45 11:30 AM
Transferrin Problem Space Lab Work,
Stephen J. Everse
11:30 – 12:00 PM
Introduction to BEDROCK Web Pages and Uploading Projects
Stephen J. Everse
12:00 – 1:15 PM

Lunch, group work and discussions; developing bioinformatics curricula (decide on final project)

1:15 2:00 PM
Lab work
2:00 2:30 PM

PGRAPH : Genomic order and content to produce bacterial phylogenetic trees. (Noppadon Khirpet, NECTEC, Bangok Thailand , in absentia), John R. Jungck

2:30 2:45 PM
2:45 3:15 PM

Sequence and Consequence Activity Introduction
C. Kerfeld, University of California, Los Angeles

3:15 4:00 PM

Sequence and Consequence Activity Lab Work
C. Kerfeld

4:00 6:00 PM
Group work on Curricular Project and PowerPoint preparation

Sunday, March 5th

8:00 9:30 AM
Group work and PowerPoint preparation
9:30 11:00 AM

Web Site and Power Point Presentations
(All participants share projects and courses)

11:00 11:15 AM
11:15 Noon

How to stay involved, feedback, sharing table (we will duplicate materials for participants), cut and distribute CDs, web sites & databases, collaboratories, other resources.

For more information please contact Sue Risseeuw (608/363-2012).

Sponsored by a grant from the National Science Foundation (DUE/CCLI-ND),
the American Society for Microbiology

and the

 BioQUEST Home Page