4:30 –- 6:00 PM |
Welcome Reception |
| 6:00 PM |
Welcome from Chet Fornari and Neal Abraham, DePauw University |
| 6:15 –- 6:45 PM |
Brief introduction to workshop
John R. Jungck, PI, BEDROCK |
| 6:45 –- 7:15 PM |
Introduction to TrpCage Problem Space
Rama Viswanathan, Beloit College; Tia Johnson, Assistant Director, BEDROCK |
| 7:15 –- 7:30 PM |
Break |
| 7:30 –- 9:00 PM |
TrpCage Lab Work
Tia Johnson and Rama Viswanathan |
| 8:00 AM |
Continental Breakfast |
| 9 –- 9:45 AM |
Overview of BioQUEST Curriculum Consortium and BEDROCK
John R. Jungck |
| 9:45 –- 10:15 AM |
Introduction to Topoisomerases Problem Space
John R. Jungck |
| 10:15 –- 10:30 AM |
Break |
| 10:30 –- 11:30 AM |
Topoisomerases Problem Space Lab Work (DNA Topology and Knotty DNA)
John R. Jungck; Tim Herman, Milwaukee School of Engineering |
| 11:30 –- 11:45 AM |
Introduction to BEDROCK web pages
Tia Johnson |
| 11:45 –- 1:15 PM |
Lunch and group work |
| 1:15 –- 2:30 PM |
Phylogenetic Explorations
- BEDROCK Excel Programs:
EvolSeq (Ultrametric and Additive Trees), Split Decomp, and Dynamic Programming
- MacClade (Phylogenetic analysis)
- Graph Theory of Trees (Molecular cladistics and Tree counting)
- Historians of Life (Visualizing Regions of Conservation in Protein Structures)
|
| 2:30 –- 2:45 PM |
Break |
| 2:45 –- 3:15 PM |
Introduction to Analog Models and Rapid Prototyping
Tim Herman |
| 3:15 –- 4:45 PM |
Jackie Roberts and Tim Herman |
| 4:45 –- 6:00 PM |
Group Work and Poster Preparation |
6:00 –- 7:30 PM |
Supper on your own |
| 7:30 –- 9:00 PM |
Speaker
Paul McCreary, Xavier University of Louisiana |
| 8:00 AM |
Continental Breakfast |
| 9:00 –- 10:00 AM |
Poster Presentations |
| 10:15 –- 10:45 AM |
Protein Structure Determination in the Classroom - A Project Based Course
David Roberts
|
| 10:45 –- 11:45 AM |
Protein Structure L ab Work |
| 11:45 –- 1:15 PM |
Lunch and group work and discussions |
| 1:15 –- 2:45 PM |
Structural Bioinformatics
John R. Jungck |
| 2:45 –- 3:00 PM |
Break |
| 3:00 –- 6:00 PM |
Group Work and PowerPoint Preparation – all staff will be available to help |
| 6:30 PM |
Dinner as a group – Walden Inn – each diner is responsible for his or her own tab |
| 8:00 AM |
Continental Breakfast |
| 9:00 –- 10:30 AM |
Power Point presentations (sharing projects and courses) |
| 10:20 –- 10:30 AM |
Break |
| 10:30 –- Noon |
How to stay involved, feedback, sharing table (we will duplicate materials for participants), cut and distribute CDs, web sites & databases, collaboratories, other resources. |
